rna_rna_interaction

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CUDA_VISIBLE_DEVICES=0 python run_rr_inter.py \
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--model_name_or_path output/PROMPT,BERT/checkpoint-18750/optimizer.pt \
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--dataset_dir data/ft/rr/ \
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--dataset MirTarRAW \
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--output output_ft/ \
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--device gpu \
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--batch_size 32 \
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--save_every_n_epochs 1 \
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--num_train_epochs 10

 

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python task/rna_rna_interaction.py \
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    --dataset_path "data/ft/rr_inter/MirTarRAW/MirTarRAW.csv" \
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    --pretrained_path "output/pretrain/checkpoint_20251212_114554_epoch_1.pt" \
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    --epochs 10 \
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    --batch_size 32 \
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    --lr 1e-6 \
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    --scheduler_type cosine \
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    --warmup_epochs 1

 

sequence_classification

nRC

备注

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CUDA_VISIBLE_DEVICES=0 python run_seq_cls.py \
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    --dataset nRC \
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    --batch_size 32 \
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    --num_train_epochs 10 \
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    --model_name_or_path "./output/PROMPT,BERT/checkpoint-18750/" \
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    --output "./output_ft/seq_cls/nRC"

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CUDA_VISIBLE_DEVICES=2 python task/sequence_classification.py \
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    --dataset_dir ./data/ft/seq_cls/nRC/ \
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    --pretrained_path ./output/pretrain/checkpoint_20251212_114554_epoch_1.pt \
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    --config_path ./configs/hnet_1stage_L.json \
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    --output_dir ./output_ft/seq_cls/nRC \
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    --batch_size 16 \
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    --epochs 10 \
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    --lr 1e-4 

 

LncRNA_M

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CUDA_VISIBLE_DEVICES=1 python run_seq_cls.py \
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    --dataset lncRNA_M \
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    --batch_size 4 \
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    --num_train_epochs 10 \
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    --model_name_or_path "./output/PROMPT,BERT/checkpoint-18750/" \
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    --output "./output_ft/seq_cls/lncRNA_M"

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CUDA_VISIBLE_DEVICES=0 python task/sequence_classification.py \
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    --dataset_dir ./data/ft/seq_cls/lncRNA_M/ \
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    --pretrained_path ./output/pretrain/checkpoint_20251212_114554_epoch_1.pt \
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    --config_path ./configs/hnet_1stage_L.json \
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    --output_dir ./output_ft/seq_cls/lncRNA_M \
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    --batch_size 8 \
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    --epochs 10 \
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    --lr 1e-4

 

LncRNA_H

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CUDA_VISIBLE_DEVICES=2 python run_seq_cls.py \
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    --dataset lncRNA_H \
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    --batch_size 4 \
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    --num_train_epochs 10 \
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    --model_name_or_path "./output/PROMPT,BERT/checkpoint-18750/" \
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    --output "./output_ft/seq_cls/lncRNA_H"

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CUDA_VISIBLE_DEVICES=2 python task/sequence_classification.py \
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    --dataset_dir ./data/ft/seq_cls/lncRNA_H/ \
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    --pretrained_path ./output/pretrain/checkpoint_20251212_114554_epoch_1.pt \
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    --config_path ./configs/hnet_1stage_L.json \
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    --output_dir ./output_ft/seq_cls/lncRNA_H \
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    --batch_size 8 \
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    --epochs 10 \
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    --lr 1e-4